变形古菌界

变形古菌界
	受到病毒STSV-1（英语：STSV-1）感染的硫化叶菌属
科学分类
域：	古菌域 Archaea
界：	变形古菌界 Proteoarchaeota; Petitjean et al. 2014
超门与门
	TACK超门（英语：TACK）曙古菌门（英语：Aigarchaeota）; 深古菌门（英语：Bathyarchaeota）; 泉古菌门; 地古菌门（英语：Geoarchaeota）; 初古菌门; 奇古菌门（英语：Nitrososphaerota）; 佛斯特拉古菌门（英语：Verstraetearchaeota）; ; 神之领域超门洛基古菌门（英语：Lokiarchaeota）; 索尔古菌门（英语：Thorarchaeota）; 奥丁古菌门（英语：Odinarchaeota）; 海姆达尔古菌门（英语：Heimdallarchaeota）; ;
异名
	Crenarchaeida Luketa 2012; Crenarchaeota Woese, Kandler & Wheelis 1990;

变形古菌界（Proteoarchaeota）是一个提议中的、位于古菌域中的界，而这个界的生物被认为与真核生物相关。^[2]^[3]^[a]

分类

这类群的系统发生学关系尚在讨论阶段，而各类群成员间的关系如下所示：^[4]^[5]^[6]^[7]

变形古菌界

TACK超门

初古菌门

泉古菌门

	曙古菌门（Aigarchaeota）

	地古菌门（Geoarchaeota）

	奇古菌门（Nitrososphaerota）

	深古菌门（Bathyarchaeota）

阿斯加德古菌超门

	洛基古菌门

	奥丁古菌门

	索尔古菌门

	海姆达尔古菌门

(+ α-变形菌)	真核生物

注解

^ 这类群有时又称作TACK；而TACK的名称来自奇古菌门（Nitrososphaerota）、曙古菌门（Aigarchaeota）、泉古菌门（Crenarchaeota）、及初古菌门（Korarchaeota）这四个早期发现的子类群名称的首字母缩写。由于这类群的系统发生未解决之故，因此变形古菌及TACK这两个名称有可能会在重新分类后变得不同。

参考资料

^ Castelle CJ, Banfield JF. Major New Microbial Groups Expand Diversity and Alter our Understanding of the Tree of Life. Cell. 2018, 172 (6): 1181–1197. PMID 29522741. doi:10.1016/j.cell.2018.02.016 .
^ Petitjean, C.; Deschamps, P.; López-García, P.; Moreira, D. Rooting the domain Archaea by phylogenomic analysis supports the foundation of the new kingdom Proteoarchaeota. Genome Biol. Evol. 2014, 7 (1): 191–204. PMC 4316627 . PMID 25527841. doi:10.1093/gbe/evu274.
^ Eugene V. Koonin. Archaeal ancestors of Eukaryotes: Not so elusive any more. BMC Biology. 2015, 13 (1): 84. PMC 4594999 . PMID 26437773. doi:10.1186/s12915-015-0194-5.
^ Spang, Anja; Saw, Jimmy H.; Jørgensen, Steffen L.; Zaremba-Niedzwiedzka, Katarzyna; Martijn, Joran; Lind, Anders E.; van Eijk, Roel; Schleper, Christa; Guy, Lionel; Ettema, Thijs J.G. Complex archaea that bridge the gap between prokaryotes and eukaryotes. Nature. 2015, 521 (7551): 173–179. Bibcode:2015Natur.521..173S. PMC 4444528 . PMID 25945739. doi:10.1038/nature14447.
^ Zaremba-Niedzwiedzka, Katarzyna; Caceres, Eva F.; Saw, Jimmy H.; Bäckström, Disa; Juzokaite, Lina; Vancaester, Emmelien; Seitz, Kiley W.; Anantharaman, Karthik; Starnawski, Piotr; Kjeldsen, Kasper U.; Stott, Matthew B.; Nunoura, Takuro; Banfield, Jillian F.; Schramm, Andreas; Baker, Brett J.; Spang, Anja; Ettema, Thijs J.G. Asgard archaea illuminate the origin of eukaryotic cellular complexity. Nature. 2017, 541 (7637): 353–358 [2022-07-27]. Bibcode:2017Natur.541..353Z. OSTI 1580084. PMID 28077874. S2CID 4458094. doi:10.1038/nature21031. （原始内容存档于2019-12-05）.
^ Zaremba-Niedzwiedzka, Katarzyna; et al. Asgard archaea illuminate the origin of eukaryotic cellular complexity. Nature. 19 January 2017, 541 (7637): 353–358 [2022-07-27]. Bibcode:2017Natur.541..353Z. OSTI 1580084. PMID 28077874. S2CID 4458094. doi:10.1038/nature21031. （原始内容存档于2019-12-05）.
^ Fournier, Gregory P.; Poole, Anthony M. A briefly argued case that Asgard Archaea are part of the Eukaryote tree. Frontiers in Microbiology. 2018, 9: 1896. ISSN 1664-302X. PMC 6104171 . PMID 30158917. doi:10.3389/fmicb.2018.01896  （英语）.

[4] 这类群有时又称作TACK；而TACK的名称来自奇古菌门（Nitrososphaerota）、曙古菌门（Aigarchaeota）、泉古菌门（Crenarchaeota）、及初古菌门（Korarchaeota）这四个早期发现的子类群名称的首字母缩写。由于这类群的系统发生未解决之故，因此变形古菌及TACK这两个名称有可能会在重新分类后变得不同。

[1] Castelle CJ, Banfield JF. Major New Microbial Groups Expand Diversity and Alter our Understanding of the Tree of Life. Cell. 2018, 172 (6): 1181–1197. PMID 29522741. doi:10.1016/j.cell.2018.02.016 .

[2] Petitjean, C.; Deschamps, P.; López-García, P.; Moreira, D. Rooting the domain Archaea by phylogenomic analysis supports the foundation of the new kingdom Proteoarchaeota. Genome Biol. Evol. 2014, 7 (1): 191–204. PMC 4316627 . PMID 25527841. doi:10.1093/gbe/evu274.

[3] Eugene V. Koonin. Archaeal ancestors of Eukaryotes: Not so elusive any more. BMC Biology. 2015, 13 (1): 84. PMC 4594999 . PMID 26437773. doi:10.1186/s12915-015-0194-5.

[SpangSaw2015-5] Spang, Anja; Saw, Jimmy H.; Jørgensen, Steffen L.; Zaremba-Niedzwiedzka, Katarzyna; Martijn, Joran; Lind, Anders E.; van Eijk, Roel; Schleper, Christa; Guy, Lionel; Ettema, Thijs J.G. Complex archaea that bridge the gap between prokaryotes and eukaryotes. Nature. 2015, 521 (7551): 173–179. Bibcode:2015Natur.521..173S. PMC 4444528 . PMID 25945739. doi:10.1038/nature14447.

[Zaremba-NiedzwiedzkaCaceres2017-6] Zaremba-Niedzwiedzka, Katarzyna; Caceres, Eva F.; Saw, Jimmy H.; Bäckström, Disa; Juzokaite, Lina; Vancaester, Emmelien; Seitz, Kiley W.; Anantharaman, Karthik; Starnawski, Piotr; Kjeldsen, Kasper U.; Stott, Matthew B.; Nunoura, Takuro; Banfield, Jillian F.; Schramm, Andreas; Baker, Brett J.; Spang, Anja; Ettema, Thijs J.G. Asgard archaea illuminate the origin of eukaryotic cellular complexity. Nature. 2017, 541 (7637): 353–358 [2022-07-27]. Bibcode:2017Natur.541..353Z. OSTI 1580084. PMID 28077874. S2CID 4458094. doi:10.1038/nature21031. （原始内容存档于2019-12-05）.

[Nature2017_01_19-7] Zaremba-Niedzwiedzka, Katarzyna; et al. Asgard archaea illuminate the origin of eukaryotic cellular complexity. Nature. 19 January 2017, 541 (7637): 353–358 [2022-07-27]. Bibcode:2017Natur.541..353Z. OSTI 1580084. PMID 28077874. S2CID 4458094. doi:10.1038/nature21031. （原始内容存档于2019-12-05）.

[Fournier_Poole_2018-8] Fournier, Gregory P.; Poole, Anthony M. A briefly argued case that Asgard Archaea are part of the Eukaryote tree. Frontiers in Microbiology. 2018, 9: 1896. ISSN 1664-302X. PMC 6104171 . PMID 30158917. doi:10.3389/fmicb.2018.01896  （英语）.

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